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portfolio
publications
Towards understanding the molecular basis of cockroach tergal gland morphogenesis. A transcriptomic approach
Journal: Insect Biochemistry and Molecular Biology, 2015
Xavier Belles, Guillem Ylla, "Towards understanding the molecular basis of cockroach tergal gland morphogenesis. A transcriptomic approach." Insect Biochemistry and Molecular Biology, 2015. http://www.sciencedirect.com/science/article/pii/S0965174815300114
The microRNA toolkit of insects
Journal: Scientific Reports, 2016
Publisher: Nature Publishing Group
Guillem Ylla, Bastian Fromm, Maria Piulachs, Xavier Belles, "The microRNA toolkit of insects." Scientific Reports, 2016.
Comparative analysis of miRNA expression during the development of insects of different metamorphosis modes and germ-band types
Journal: BMC Genomics, 2017
Publisher: Pompeu Fabra University
Guillem Ylla, Maria Piulachs, Xavier Belles, "Comparative analysis of miRNA expression during the development of insects of different metamorphosis modes and germ-band types." BMC Genomics, 2017. https://doi.org/10.1186/s12864-017-4177-5
Hemimetabolous genomes reveal molecular basis of termite eusociality
Journal: Nature Ecology and Evolution, 2018
Mark Harrison, Evelien Jongepier, Hugh Robertson, Nicolas Arning, Tristan Bitard-Feildel, Hsu Chao, Christopher Childers, Huyen Dinh, Harshavardhan Doddapaneni, Shannon Dugan, Johannes Gowin, Carolin Greiner, Yi Han, Haofu Hu, Daniel Hughes, Ann Huylmans, Carsten Kemena, Lukas Kremer, Sandra Lee, Alberto Lopez-Ezquerra, Ludovic Mallet, Jose Monroy-Kuhn, Annabell Moser, Shwetha Murali, Donna Muzny, Saria Otani, Maria Piulachs, Monica Poelchau, Jiaxin Qu, Florentine Schaub, Ayako Wada-Katsumata, Kim Worley, Qiaolin Xie, Guillem Ylla, Michael Poulsen, Richard Gibbs, Coby Schal, Stephen Richards, Xavier Belles, Judith Korb, Erich Bornberg-Bauer, "Hemimetabolous genomes reveal molecular basis of termite eusociality." Nature Ecology and Evolution, 2018.
Comparative transcriptomics in two extreme neopterans reveal general trends in the evolution of modern insects
Journal: iScience, 2018
Publisher: Elsevier
Guillem Ylla, Maria-Dolors Piulachs, Xavier Belles, "Comparative transcriptomics in two extreme neopterans reveal general trends in the evolution of modern insects." iScience, 2018. https://linkinghub.elsevier.com/retrieve/pii/S2589004218300725
Diversity of piRNA expression patterns during the ontogeny of the German cockroach
Journal: Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2018
Publisher: Wiley-Blackwell
Natalia Llonga, Guillem Ylla, Josep Bau, Xavier Belles, Maria Piulachs, "Diversity of piRNA expression patterns during the ontogeny of the German cockroach." Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2018. http://doi.wiley.com/10.1002/jez.b.22815
Expansions of key protein families in the German cockroach highlight the molecular basis of its remarkable success as a global indoor pest
Journal: Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2018
Mark Harrison, Nicolas Arning, Lukas Kremer, Guillem Ylla, Xavier Belles, Erich Bornberg-Bauer, Ann Huylmans, Evelien Jongepier, Maria Piulachs, Stephen Richards, Coby Schal, "Expansions of key protein families in the German cockroach highlight the molecular basis of its remarkable success as a global indoor pest." Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2018. http://doi.wiley.com/10.1002/jez.b.22824
Zelda and the maternal-to-zygotic transition in cockroaches
Journal: FEBS Journal, 2019
Publisher: John Wiley \& Sons, Ltd (10.1111)
Alba Ventos-Alfonso, Guillem Ylla, Xavier Belles, "Zelda and the maternal-to-zygotic transition in cockroaches." FEBS Journal, 2019. https://onlinelibrary.wiley.com/doi/abs/10.1111/febs.14856
DNMT1 Promotes Genome Methylation and Early Embryo Development in Cockroaches
Journal: iScience, 2020
Alba Vento-Alfonso, Guillem Ylla, Jose-Carlos Montanes, Xavier Belles, "DNMT1 Promotes Genome Methylation and Early Embryo Development in Cockroaches." iScience, 2020.
DNMT1 promotes genome methylation and early embryo development in cockroaches
Journal: iScience, 2020
Publisher: Elsevier
Alba Ventós-Alfonso, Guillem Ylla, Jose-Carlos Montañes, Xavier Belles, "DNMT1 promotes genome methylation and early embryo development in cockroaches." iScience, 2020. https://linkinghub.elsevier.com/retrieve/pii/S2589004220309755
MirCure: a tool for quality control, filter and curation of microRNAs of animals and plants
Journal: Bioinformatics, 2020
Publisher: Oxford University Press (OUP)
Guillem Ylla, Tianyuan Liu, Ana Conesa, "MirCure: a tool for quality control, filter and curation of microRNAs of animals and plants." Bioinformatics, 2020. https://academic.oup.com/bioinformatics/article/36/Supplement_2/i618/6055935
siRNA enrichment in Argonaute 2-depleted Blattella germanica
Journal: Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, 2021
Publisher: Elsevier
José Montañés, Carlos Rojano, Guillem Ylla, Maria Piulachs, José Maestro, "siRNA enrichment in Argonaute 2-depleted Blattella germanica." Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, 2021. https://linkinghub.elsevier.com/retrieve/pii/S1874939921000225
Molecular characterization of genetic diversity in apricot cultivars: Current situation and future perspectives
Journal: Agronomy, 2021
Publisher: Multidisciplinary Digital Publishing Institute
Sara Herrera, José Hormaza, Jorge Lora, Guillem Ylla, Javier Rodrigo, "Molecular characterization of genetic diversity in apricot cultivars: Current situation and future perspectives." Agronomy, 2021. https://www.mdpi.com/2073-4395/11/9/1714/htm
Distinct gene expression dynamics in germ line and somatic tissue during ovariole morphogenesis in Drosophila melanogaster
Journal: G3 GenestextbarGenomestextbarGenetics, 2021
Publisher: Oxford University Press (OUP)
Shreeharsha Tarikere, Guillem Ylla, Cassandra Extavour, "Distinct gene expression dynamics in germ line and somatic tissue during ovariole morphogenesis in Drosophila melanogaster." G3 GenestextbarGenomestextbarGenetics, 2021. https://academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkab305/6364899
Evolution of a cytoplasmic determinant: evidence for the biochemical basis of functional evolution of the novel germ line regulator oskar
Journal: Molecular Biology and Evolution, 2021
Leo Blondel, Savandara Besse, Emily Rivard, Guillem Ylla, Cassandra Extavour, "Evolution of a cytoplasmic determinant: evidence for the biochemical basis of functional evolution of the novel germ line regulator oskar." Molecular Biology and Evolution, 2021. https://academic.oup.com/mbe/advance-article/doi/10.1093/molbev/msab284/6373905
Evolution of a Cytoplasmic Determinant: Evidence for the Biochemical Basis of Functional Evolution of the Novel Germ Line Regulator Oskar
Journal: Molecular Biology and Evolution, 2021
Publisher: Oxford Academic
Leo Blondel, Savandara Besse, Emily Rivard, Guillem Ylla, Cassandra Extavour, "Evolution of a Cytoplasmic Determinant: Evidence for the Biochemical Basis of Functional Evolution of the Novel Germ Line Regulator Oskar." Molecular Biology and Evolution, 2021. https://academic.oup.com/mbe/article/38/12/5491/6373905
Insights into the genomic evolution of insects from cricket genomes
Journal: Communications Biology, 2021
Publisher: Nature Publishing Group
Guillem Ylla, Taro Nakamura, Takehiko Itoh, Rei Kajitani, Atsushi Toyoda, Sayuri Tomonari, Tetsuya Bando, Yoshiyasu Ishimaru, Takahito Watanabe, Masao Fuketa, Yuji Matsuoka, Austen Barnett, Sumihare Noji, Taro Mito, Cassandra Extavour, "Insights into the genomic evolution of insects from cricket genomes." Communications Biology, 2021. http://www.nature.com/articles/s42003-021-02197-9
Cricket: The third domesticated insect
Journal: Current Topics in Developmental Biology, 2022
Taro Mito, Yoshiyasu Ishimaru, Takahito Watanabe, Taro Nakamura, Guillem Ylla, Sumihare Noji, Cassandra Extavour, "Cricket: The third domesticated insect." Current Topics in Developmental Biology, 2022. https://linkinghub.elsevier.com/retrieve/pii/S0070215322000096
Genomics and genome editing techniques of crickets, an emerging model insect for biology and food science
Journal: Current Opinion in Insect Science, 2022
Publisher: Elsevier
Taro Nakamura, Guillem Ylla, Cassandra Extavour, "Genomics and genome editing techniques of crickets, an emerging model insect for biology and food science." Current Opinion in Insect Science, 2022.
Two avian Plasmodium species trigger different transcriptional responses on their vector Culex pipiens
Journal: Molecular Ecology, 2023
_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/mec.17240
Marta Garrigós, Guillem Ylla, Josué Puente, Jordi Figuerola, María Ruiz-López, "Two avian Plasmodium species trigger different transcriptional responses on their vector Culex pipiens." Molecular Ecology, 2023. https://onlinelibrary.wiley.com/doi/abs/10.1111/mec.17240
Reduction of embryonic E93 expression as a hypothetical driver of the evolution of insect metamorphosis
Journal: Proceedings of the National Academy of Sciences, 2023
Publisher: Proceedings of the National Academy of Sciences
Ana Fernandez-Nicolas, Gabriela Machaj, Alba Ventos-Alfonso, Viviana Pagone, Toshinori Minemura, Takahiro Ohde, Takaaki Daimon, Guillem Ylla, Xavier Belles, "Reduction of embryonic E93 expression as a hypothetical driver of the evolution of insect metamorphosis." Proceedings of the National Academy of Sciences, 2023. https://www.pnas.org/doi/abs/10.1073/pnas.2216640120
oskar acts with the transcription factor Creb to regulate long-term memory in crickets
Journal: Proceedings of the National Academy of Sciences, 2023
Publisher: Proceedings of the National Academy of Sciences
Arpita Kulkarni, Ben Ewen-Campen, Kanta Terao, Yukihisa Matsumoto, Yaolong Li, Takayuki Watanabe, Jonchee Kao, Swapnil Parhad, Guillem Ylla, Makoto Mizunami, Cassandra Extavour, "oskar acts with the transcription factor Creb to regulate long-term memory in crickets." Proceedings of the National Academy of Sciences, 2023. https://www.pnas.org/doi/10.1073/pnas.2218506120
Dysregulated iron homeostasis in dystrophin-deficient cardiomyocytes: correction by gene editing and pharmacological treatment
Journal: Cardiovascular Research, 2023
Kalina Andrysiak, Gabriela Machaj, Dominik Priesmann, Olga Woźnicka, Alicja Martyniak, Guillem Ylla, Marcus Krüger, Elżbieta Pyza, Anna Potulska-Chromik, Anna Kostera-Pruszczyk, Agnieszka Łoboda, Jacek Stępniewski, Józef Dulak, "Dysregulated iron homeostasis in dystrophin-deficient cardiomyocytes: correction by gene editing and pharmacological treatment." Cardiovascular Research, 2023. https://academic.oup.com/cardiovascres/advance-article/doi/10.1093/cvr/cvad182/7468896
Dysregulated iron homeostasis in dystrophin-deficient cardiomyocytes: correction by gene editing and pharmacological treatment
Journal: Cardiovascular Research, 2024
Kalina Andrysiak, Gabriela Machaj, Dominik Priesmann, Olga Woźnicka, Alicja Martyniak, Guillem Ylla, Marcus Krüger, Elżbieta Pyza, Anna Potulska-Chromik, Anna Kostera-Pruszczyk, Agnieszka Łoboda, Jacek Stępniewski, Józef Dulak, "Dysregulated iron homeostasis in dystrophin-deficient cardiomyocytes: correction by gene editing and pharmacological treatment." Cardiovascular Research, 2024. https://doi.org/10.1093/cvr/cvad182
Insights into the early transcriptomic response against watermelon mosaic virus in melon
Journal: BMC Plant Biology, 2024
María López-Martín, Javier Montero-Pau, Guillem Ylla, María Gómez-Guillamón, Belén Picó, Ana Pérez-de-Castro, "Insights into the early transcriptomic response against watermelon mosaic virus in melon." BMC Plant Biology, 2024. https://doi.org/10.1186/s12870-024-04745-x
The genome assembly and annotation of the cricket Gryllus longicercus
Journal: Scientific Data, 2024
Publisher: Nature Publishing Group
Szymon Szrajer, David Gray, Guillem Ylla, "The genome assembly and annotation of the cricket Gryllus longicercus." Scientific Data, 2024. https://www.nature.com/articles/s41597-024-03554-z
Upregulation of utrophin improves the phenotype of Duchenne muscular dystrophy hiPSC-derived CMs
Journal: Molecular Therapy - Nucleic Acids, 2024
Publisher: Elsevier
Kalina Andrysiak, Paweł Ferdek, Anna Sanetra, Gabriela Machaj, Luisa Schmidt, Izabela Kraszewska, Katarzyna Sarad, Katarzyna Palus-Chramiec, Olga Lis, Marta Targosz-Korecka, Marcus Krüger, Marian Lewandowski, Guillem Ylla, Jacek Stępniewski, Józef Dulak, "Upregulation of utrophin improves the phenotype of Duchenne muscular dystrophy hiPSC-derived CMs." Molecular Therapy - Nucleic Acids, 2024. https://www.cell.com/molecular-therapy-family/nucleic-acids/abstract/S2162-2531(24)00134-3
talks
Development of cockroach tergal glands as a minimal model of insect metamorphosis.
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The miRNA complement of the hemimetabolous insect Blattella germanica
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The MicroRNA toolkit of Insects
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Understanding the functional role of alternative splicing in tomato ripening
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Genome assembly and annotation of the cricket Gryllus bimaculatus.
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Genome assembly and annotation of the cricket Gryllus bimaculatus
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Genome assembly and annotation of the cricket Gryllus bimaculatus.
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Cricket genomes: the genomes of future food
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MirCure: A tool for quality control, filter, and curation of microRNAs of animals and plants.
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The new FBBB’s Laboratory of Bioinformatics and Genome Biology: computational approaches to study genes, genomes, gene regulatory networks
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teaching
Supervisor of Final Master Projects at UOC
Master course</i>
Since 2017 I am a teaching collaborator of the on-line Master in Bioinformatics and Biostatistics at the Open University of Catalonia.
Teaching Fellow - Understanding Darwinism (Gen Ed 1004)
Undergraduate General Education Course</i>
Teaching Fellow of the course on Understanding Darwinism (GenEd 1004) at Harvard University.